IQ-TREE multicore version 1.6.12 for Linux 64-bit built Aug 15 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    rabi (SSE4.2, 15 GB RAM)
Command: ../../iqtree -s Pettalidae_18S_mafft_BMGE.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    264844 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Jun 15 23:13:34 2022
Kernel:  SSE2 - 1 threads (24 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 24 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Pettalidae_18S_mafft_BMGE.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 123 sequences with 1762 columns, 219 distinct patterns
66 parsimony-informative, 132 singleton sites, 1564 constant sites
                                             Gap/Ambiguity  Composition  p-value
   1  Limulus_polyphemus                             0.17%    passed     97.80%
   2  Metasiro_savannahensis_MCZ-134557              0.96%    passed     99.57%
   3  Cyphophthalmus_duricorius_MCZ-135009           0.00%    passed     99.88%
   4  Parasiro_coiffaiti_MCZ-132372                  0.00%    passed     99.39%
   5  Parasiro_minor_MCZ-132374                      0.00%    passed     99.39%
   6  Paramiopsalis_ramulosus_MCZ-135006             0.06%    passed     99.80%
   7  Siro_rubens_MCZ-132391                         0.34%    passed     99.81%
   8  Siro_exilis_MCZ-134551                         0.06%    passed     98.13%
   9  Suzukielus_sauteri_MCZ-132256                  0.00%    passed     92.90%
  10  Aoraki_westlandica_MCZ-134653                  1.14%    passed     99.85%
  11  Aoraki_crypta_MCZ-101289                       0.00%    passed     99.99%
  12  Aoraki_denticulata_denticulata_MCZ-134642      3.86%    passed     99.14%
  13  Aoraki_denticulata_denticulata_MCZ-134647_1    0.00%    passed     99.97%
  14  Aoraki_denticulata_denticulata_MCZ-134639_1    0.00%    passed     99.98%
  15  Aoraki_denticulata_denticulata_MCZ-134646      0.00%    passed     99.97%
  16  Aoraki_denticulata_major_MCZ-35669             0.00%    passed     99.97%
  17  Aoraki_denticulata_major_MCZ-134644            0.17%    passed     99.88%
  18  Aoraki_grandis_MCZ-134652                      0.00%    passed     99.99%
  19  Aoraki_granulosa_MCZ-134675                    1.82%    passed     99.72%
  20  Aoraki_granulosa_MCZ-134684                    0.00%    passed     99.97%
  21  Aoraki_healyi_MCZ-134638                       0.00%    passed     99.99%
  22  Aoraki_inerma_MCZ-134648                       0.00%    passed     99.99%
  23  Aoraki_longitarsa_MCZ-35659                    0.00%    passed     99.97%
  24  Aoraki_longitarsa_MCZ-35660                    0.00%    passed     99.97%
  25  Aoraki_longitarsa_MCZ-1346566_1                0.06%    passed     99.90%
  26  Aoraki_longitarsa_MCZ-134656_2                 0.00%    passed     99.97%
  27  Aoraki_longitarsa_CMNZ                         0.00%    passed     99.97%
  28  Aoraki_tumidata_MCZ-133838                     0.00%    passed     99.99%
  29  Aoraki_cf_tumidata_DOC094                      0.06%    passed     99.98%
  30  Archaeopurcellia_eureka_MCZ-162243             0.34%    passed     99.99%
  31  Archaeopurcellia_eureka_MCZ-162249             0.34%    passed     99.99%
  32  Austropurcellia_acuta_MCZ-134701               0.00%    passed     99.91%
  33  Austropurcellia_arcticosa_MCZ-132325          26.16%    passed     74.45%
  34  Austropurcellia_cadens_CASENT9035046           2.33%    passed     99.07%
  35  Austropurcellia_clousei_MCZ-132339             4.26%    passed     97.72%
  36  Austropurcellia_culminis_MCZ-132322            3.35%    passed     98.84%
  37  Austropurcellia_daviesae_MCZ-132323            2.33%    passed     99.07%
  38  Austropurcellia_despectata_MCZ-132324          2.33%    passed     99.07%
  39  Austropurcellia_giribeti_MCZ-132337            0.00%    passed     99.97%
  40  Austropurcellia_giribeti_MCZ-134696            0.00%    passed     99.97%
  41  Austropurcellia_scoparia_MCZ-134700            1.36%    passed     99.94%
  42  Austropurcellia_sharmai_MCZ-134698             0.00%    passed     99.92%
  43  Austropurcellia_tholei_MCZ-134697              0.00%    passed     99.97%
  44  Austropurcellia_vicina_MCZ-132318              3.23%    passed     97.77%
  45  Austropurcellia_vicina_MCZ-132334              0.00%    passed     99.87%
  46  Chileogovea_jocasta_MCZ-134713                 0.00%    passed     99.89%
  47  Chileogovea_jocasta_MCZ-134714                 0.00%    passed     99.97%
  48  Chileogovea_jocasta_MCZ-134715                 0.11%    passed     99.94%
  49  Chileogovea_oedipus_MCZ-134709                 0.00%    passed     99.97%
  50  Chileogovea_oedipus_MCZ-134710                 0.00%    passed    100.00%
  51  Chileogovea_oedipus_MCZ-134711                 0.00%    passed    100.00%
  52  Chileogovea_oedipus_MCZ-134712                 0.00%    passed     99.97%
  53  Karripurcellia_harveyi_MCZ-132345              0.00%    passed     99.04%
  54  Karripurcellia_peckorum_MCZ-134719             0.06%    passed     99.48%
  55  Karripurcellia_peckorum_MCZ-134720             0.00%    passed     99.04%
  56  Karripurcellia_peckorum_MCZ-134721             0.00%    passed     99.04%
  57  Karripurcellia_peckorum_MCZ-134725             0.00%    passed     99.04%
  58  Karripurcellia_peckorum_MCZ-134726             0.00%    passed     99.90%
  59  Neopurcellia_salmoni_MCZ-29317                 0.06%    passed     99.97%
  60  Neopurcellia_salmoni_MCZ-134739                0.00%    passed     99.94%
  61  Neopurcellia_salmoni_MCZ-134741                0.00%    passed     99.94%
  62  Parapurcellia_amatola_MCZ-133841               0.00%    passed     99.99%
  63  Parapurcellia_convexa_MCZ-134744               0.00%    passed     99.93%
  64  Parapurcellia_convexa_MCZ-128902               0.00%    passed     99.93%
  65  Parapurcellia_fissa_MCZ-134745                 0.00%    passed     99.98%
  66  Parapurcellia_minuta_MCZ-134747                0.00%    passed     99.98%
  67  Parapurcellia_monticola_MCZ-60357_1            0.00%    passed     99.93%
  68  Parapurcellia_monticola_MCZ-60357_2            0.00%    passed     99.93%
  69  Parapurcellia_monticola_MCZ-134751             0.00%    passed     99.89%
  70  Parapurcellia_peregrinator_MCZ-128901          0.00%    passed     99.79%
  71  Parapurcellia_rumpiana_MCZ-134748              0.00%    passed     99.98%
  72  Parapurcellia_silvicola_MCZ-134742_1           0.06%    passed     99.94%
  73  Parapurcellia_silvicola_MCZ-134742_2           0.00%    passed     99.93%
  74  Parapurcellia_staregai_MCZ-134746              0.00%    passed     99.98%
  75  Purcellia_sp_MCZ-128897                        0.00%    passed     99.98%
  76  Parapurcellia_nsp_Limpopo_MCZ-128900          26.16%    passed     76.38%
  77  Pettalus_thwaitesi_DNA101223                   0.00%    passed     99.92%
  78  Pettalus_sp_MCZ-132353                         0.00%    passed     99.93%
  79  Pettalus_sp_MCZ-132354                         0.00%    passed     99.98%
  80  Pettalus_sp_MCZ-132356                         0.00%    passed     99.92%
  81  Pettalus_sp_MCZ-132357                         0.00%    passed     99.98%
  82  Pettalus_sp_MCZ-132359                         0.00%    passed     99.92%
  83  Pettalus_sp_MCZ-132360                         0.00%    passed     99.98%
  84  Pettalus_sp_MCZ-134967                         0.00%    passed     99.86%
  85  Purcellia_argasiformis_MCZ-134759              0.00%    passed     99.98%
  86  Purcellia_argasiformis_MCZ-134762              0.00%    passed     99.98%
  87  Purcellia_griswoldi_MCZ-128898                 0.00%    passed     99.98%
  88  Purcellia_griswoldi_MCZ-134756                 0.00%    passed     99.98%
  89  Purcellia_illustrans_MCZ-60635                 0.00%    passed     99.98%
  90  Purcellia_illustrans_MCZ-128896                0.00%    passed     99.98%
  91  Purcellia_illustrans_MCZ-134753                0.00%    passed     99.98%
  92  Purcellia_illustrans_MCZ-134754                0.00%    passed     99.96%
  93  Purcellia_leleupi_MCZ-129098                   0.00%    passed     99.98%
  94  Purcellia_sp_129493                            0.00%    passed     99.98%
  95  Purcellia_sp_129494                            0.00%    passed    100.00%
  96  Rakaia_antipodiana_MCZ-134580                  0.11%    passed     99.95%
  97  Rakaia_australis_MCZ-134592                    0.00%    passed     99.89%
  98  Rakaia_collaris_MCZ-134574                     1.36%    passed     99.92%
  99  Rakaia_digitata_MCZ-134571                     0.06%    passed     99.97%
 100  Rakaia_dorothea_MCZ-134577                     0.00%    passed     99.95%
 101  Rakaia_florensis_MCZ-134588                    0.00%    passed     99.99%
 102  Rakaia_lindsayi_MCZ-134598                     0.00%    passed     99.98%
 103  Rakaia_macra_MCZ-134582                        0.74%    passed     99.65%
 104  Rakaia_media_MCZ-134581                        0.00%    passed     99.68%
 105  Rakaia_media_MCZ-134605                        0.00%    passed     99.40%
 106  Rakaia_minutissima_MCZ-29280                  25.99%    passed     79.41%
 107  Rakaia_minutissima_MCZ-134591                  0.00%    passed     99.99%
 108  Rakaia_pauli_MCZ-134576                        0.00%    passed     99.95%
 109  Rakaia_solitaria_MCZ-134585                    0.00%    passed     99.88%
 110  Rakaia_sorenseni_MCZ-134567                    0.00%    passed     99.96%
 111  Rakaia_stewartiensis_MCZ-134599                0.00%    passed     99.98%
 112  Rakaia_uniloca_MCZ-134583                      0.00%    passed    100.00%
 113  Rakaia_uniloca_MCZ-134600                      0.00%    passed     99.89%
 114  Rakaia_sp_MCZ-35662                            0.00%    passed     99.96%
 115  Rakaia_sp_MCZ-35668                            0.00%    passed     99.95%
 116  Rakaia_sp_MCZ-100753                           0.00%    passed     99.40%
 117  Rakaia_sp_MCZ-129612                           0.00%    passed     99.95%
 118  Rakaia_sp_MCZ-129614                           0.00%    passed     99.87%
 119  Rakaia_sp_MCZ-133847                           0.00%    passed     99.95%
 120  Rakaia_sp_MCZ-133849                           0.00%    passed     99.47%
 121  Rakaia_sp_MCZ-134568                           0.11%    passed     99.97%
 122  Rakaia_sp_MCZ-134575                           2.61%    passed     98.66%
 123  Rakaia_sp_MCZ-134584                           0.00%    passed     99.95%
****  TOTAL                                          0.91%  0 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: Aoraki_grandis_MCZ-134652 is identical to Aoraki_crypta_MCZ-101289 but kept for subsequent analysis
NOTE: Aoraki_denticulata_denticulata_MCZ-134646 is identical to Aoraki_denticulata_denticulata_MCZ-134647_1 but kept for subsequent analysis
NOTE: Archaeopurcellia_eureka_MCZ-162249 is identical to Archaeopurcellia_eureka_MCZ-162243 but kept for subsequent analysis
NOTE: Austropurcellia_daviesae_MCZ-132323 is identical to Austropurcellia_cadens_CASENT9035046 but kept for subsequent analysis
NOTE: Austropurcellia_giribeti_MCZ-134696 is identical to Austropurcellia_giribeti_MCZ-132337 but kept for subsequent analysis
NOTE: Chileogovea_oedipus_MCZ-134709 is identical to Chileogovea_jocasta_MCZ-134714 but kept for subsequent analysis
NOTE: Chileogovea_oedipus_MCZ-134711 is identical to Chileogovea_oedipus_MCZ-134710 but kept for subsequent analysis
NOTE: Karripurcellia_peckorum_MCZ-134720 is identical to Karripurcellia_harveyi_MCZ-132345 but kept for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134741 is identical to Neopurcellia_salmoni_MCZ-134739 but kept for subsequent analysis
NOTE: Parapurcellia_convexa_MCZ-128902 is identical to Parapurcellia_convexa_MCZ-134744 but kept for subsequent analysis
NOTE: Parapurcellia_rumpiana_MCZ-134748 is identical to Parapurcellia_fissa_MCZ-134745 but kept for subsequent analysis
NOTE: Parapurcellia_staregai_MCZ-134746 is identical to Parapurcellia_minuta_MCZ-134747 but kept for subsequent analysis
NOTE: Purcellia_argasiformis_MCZ-134759 is identical to Purcellia_sp_MCZ-128897 but kept for subsequent analysis
NOTE: Pettalus_sp_MCZ-132356 is identical to Pettalus_thwaitesi_DNA101223 but kept for subsequent analysis
NOTE: Pettalus_sp_MCZ-132357 is identical to Pettalus_sp_MCZ-132354 but kept for subsequent analysis
NOTE: Rakaia_pauli_MCZ-134576 is identical to Rakaia_dorothea_MCZ-134577 but kept for subsequent analysis
NOTE: Rakaia_minutissima_MCZ-134591 is identical to Rakaia_florensis_MCZ-134588 but kept for subsequent analysis
NOTE: Rakaia_stewartiensis_MCZ-134599 is identical to Rakaia_lindsayi_MCZ-134598 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-100753 is identical to Rakaia_media_MCZ-134605 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-35662 is identical to Rakaia_sorenseni_MCZ-134567 but kept for subsequent analysis
NOTE: 28 identical sequences (see below) will be ignored for subsequent analysis
NOTE: Aoraki_healyi_MCZ-134638 (identical to Aoraki_crypta_MCZ-101289) is ignored but added at the end
NOTE: Aoraki_inerma_MCZ-134648 (identical to Aoraki_crypta_MCZ-101289) is ignored but added at the end
NOTE: Aoraki_tumidata_MCZ-133838 (identical to Aoraki_crypta_MCZ-101289) is ignored but added at the end
NOTE: Aoraki_denticulata_major_MCZ-35669 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_MCZ-35659 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_MCZ-35660 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_MCZ-134656_2 (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Aoraki_longitarsa_CMNZ (identical to Aoraki_denticulata_denticulata_MCZ-134647_1) is ignored but added at the end
NOTE: Austropurcellia_despectata_MCZ-132324 (identical to Austropurcellia_cadens_CASENT9035046) is ignored but added at the end
NOTE: Chileogovea_oedipus_MCZ-134712 (identical to Chileogovea_jocasta_MCZ-134714) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134721 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134725 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Parapurcellia_monticola_MCZ-60357_1 (identical to Parapurcellia_convexa_MCZ-134744) is ignored but added at the end
NOTE: Parapurcellia_monticola_MCZ-60357_2 (identical to Parapurcellia_convexa_MCZ-134744) is ignored but added at the end
NOTE: Parapurcellia_silvicola_MCZ-134742_2 (identical to Parapurcellia_convexa_MCZ-134744) is ignored but added at the end
NOTE: Purcellia_argasiformis_MCZ-134762 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_griswoldi_MCZ-128898 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_griswoldi_MCZ-134756 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-60635 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-128896 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-134753 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_leleupi_MCZ-129098 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Purcellia_sp_129493 (identical to Purcellia_sp_MCZ-128897) is ignored but added at the end
NOTE: Pettalus_sp_MCZ-132360 (identical to Pettalus_sp_MCZ-132354) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-35668 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-129612 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-133847 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-134584 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end

For your convenience alignment with unique sequences printed to Pettalidae_18S_mafft_BMGE.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.007 seconds
NOTE: ModelFinder requires 7 MB RAM!
ModelFinder will test 286 DNA models (sample size: 1762) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            4437.700     187 9249.401     9294.072     10273.077
  2  JC+I          4365.378     188 9106.757     9151.934     10135.907
  3  JC+G4         4367.445     188 9110.891     9156.068     10140.041
  4  JC+I+G4       4359.299     189 9096.597     9142.284     10131.222
  5  JC+R2         4338.629     189 9055.258     9100.945     10089.883
  6  JC+R3         4338.577     191 9059.154     9105.870     10104.727
 14  F81+F         4437.289     190 9254.578     9300.778     10294.677
 15  F81+F+I       4365.375     191 9112.751     9159.467     10158.324
 16  F81+F+G4      4367.360     191 9116.720     9163.436     10162.293
 17  F81+F+I+G4    4359.256     192 9102.511     9149.746     10153.558
 18  F81+F+R2      4338.920     192 9061.840     9109.075     10112.887
 19  F81+F+R3      4338.919     194 9065.838     9114.122     10127.834
 27  K2P           4392.128     188 9160.255     9205.433     10189.406
 28  K2P+I         4320.302     189 9018.604     9064.291     10053.228
 29  K2P+G4        4322.234     189 9022.469     9068.156     10057.093
 30  K2P+I+G4      4314.095     190 9008.190     9054.390     10048.289
 31  K2P+R2        4293.958     190 8967.916     9014.116     10008.015
 32  K2P+R3        4293.958     192 8971.916     9019.151     10022.963
 40  HKY+F         4392.185     191 9166.369     9213.085     10211.942
 41  HKY+F+I       4319.663     192 9023.325     9070.560     10074.372
 42  HKY+F+G4      4321.733     192 9027.466     9074.701     10078.513
 43  HKY+F+I+G4    4313.507     193 9013.013     9060.771     10069.535
 44  HKY+F+R2      4293.742     193 8973.483     9021.241     10030.005
 45  HKY+F+R3      4293.742     195 8977.483     9026.296     10044.953
 53  TNe           4371.965     189 9121.929     9167.616     10156.554
 54  TNe+I         4305.051     190 8990.102     9036.302     10030.201
 55  TNe+G4        4305.482     190 8990.964     9037.164     10031.063
 56  TNe+I+G4      4297.575     191 8977.150     9023.866     10022.723
 57  TNe+R2        4277.357     191 8936.714     8983.430     9982.288
 58  TNe+R3        4277.358     193 8940.717     8988.474     9997.238
 66  TN+F          4367.721     192 9119.443     9166.678     10170.490
 67  TN+F+I        4300.716     193 8987.432     9035.189     10043.953
 68  TN+F+G4       4301.068     193 8988.136     9035.894     10044.658
 69  TN+F+I+G4     4293.095     194 8974.191     9022.474     10036.186
 70  TN+F+R2       4273.076     194 8934.151     8982.435     9996.147
 71  TN+F+R3       4273.076     196 8938.153     8987.497     10011.097
 79  K3P           4391.948     189 9161.897     9207.584     10196.522
 80  K3P+I         4320.138     190 9020.276     9066.476     10060.375
 81  K3P+G4        4322.067     190 9024.134     9070.334     10064.233
 82  K3P+I+G4      4313.710     191 9009.420     9056.136     10054.993
 83  K3P+R2        4293.730     191 8969.461     9016.177     10015.034
 84  K3P+R3        4293.720     193 8973.441     9021.198     10029.962
 92  K3Pu+F        4392.003     192 9168.005     9215.240     10219.052
 93  K3Pu+F+I      4319.508     193 9025.015     9072.773     10081.537
 94  K3Pu+F+G4     4321.572     193 9029.144     9076.902     10085.666
 95  K3Pu+F+I+G4   4313.130     194 9014.261     9062.544     10076.256
 96  K3Pu+F+R2     4293.514     194 8975.028     9023.311     10037.023
 97  K3Pu+F+R3     4293.514     196 8979.028     9028.372     10051.972
105  TPM2+F        4391.745     192 9167.489     9214.724     10218.536
106  TPM2+F+I      4319.391     193 9024.782     9072.540     10081.304
107  TPM2+F+G4     4321.431     193 9028.863     9076.621     10085.384
108  TPM2+F+I+G4   4312.935     194 9013.870     9062.153     10075.866
109  TPM2+F+R2     4293.147     194 8974.294     9022.577     10036.289
110  TPM2+F+R3     4293.147     196 8978.294     9027.638     10051.238
118  TPM2u+F       4391.744     192 9167.487     9214.723     10218.535
119  TPM2u+F+I     4319.390     193 9024.780     9072.538     10081.302
120  TPM2u+F+G4    4321.431     193 9028.861     9076.619     10085.383
121  TPM2u+F+I+G4  4312.897     194 9013.794     9062.077     10075.790
122  TPM2u+F+R2    4293.146     194 8974.292     9022.575     10036.288
123  TPM2u+F+R3    4293.146     196 8978.292     9027.636     10051.236
131  TPM3+F        4392.026     192 9168.051     9215.286     10219.098
132  TPM3+F+I      4319.378     193 9024.756     9072.514     10081.277
133  TPM3+F+G4     4321.472     193 9028.944     9076.702     10085.466
134  TPM3+F+I+G4   4312.900     194 9013.800     9062.083     10075.795
135  TPM3+F+R2     4293.467     194 8974.935     9023.218     10036.930
136  TPM3+F+R3     4293.467     196 8978.935     9028.279     10051.879
144  TPM3u+F       4392.025     192 9168.050     9215.285     10219.097
145  TPM3u+F+I     4319.378     193 9024.755     9072.513     10081.277
146  TPM3u+F+G4    4321.472     193 9028.943     9076.701     10085.465
147  TPM3u+F+I+G4  4312.862     194 9013.725     9062.008     10075.721
148  TPM3u+F+R2    4293.467     194 8974.933     9023.216     10036.929
149  TPM3u+F+R3    4293.467     196 8978.933     9028.278     10051.877
157  TIMe          4371.773     190 9123.547     9169.747     10163.646
158  TIMe+I        4304.870     191 8991.740     9038.456     10037.313
159  TIMe+G4       4305.298     191 8992.596     9039.312     10038.169
160  TIMe+I+G4     4297.075     192 8978.151     9025.386     10029.198
161  TIMe+R2       4277.134     192 8938.267     8985.502     9989.314
162  TIMe+R3       4277.135     194 8942.269     8990.553     10004.265
170  TIM+F         4367.540     193 9121.080     9168.837     10177.601
171  TIM+F+I       4300.554     194 8989.109     9037.392     10051.105
172  TIM+F+G4      4300.902     194 8989.803     9038.086     10051.799
173  TIM+F+I+G4    4292.620     195 8975.240     9024.052     10042.710
174  TIM+F+R2      4272.866     195 8935.733     8984.545     10003.203
175  TIM+F+R3      4272.867     197 8939.734     8989.614     10018.153
183  TIM2e         4371.383     190 9122.765     9168.965     10162.864
184  TIM2e+I       4304.642     191 8991.285     9038.000     10036.858
185  TIM2e+G4      4305.039     191 8992.077     9038.793     10037.650
186  TIM2e+I+G4    4296.770     192 8977.540     9024.775     10028.587
187  TIM2e+R2      4276.621     192 8937.242     8984.477     9988.289
188  TIM2e+R3      4276.620     194 8941.240     8989.524     10003.236
196  TIM2+F        4367.298     193 9120.595     9168.353     10177.117
197  TIM2+F+I      4300.451     194 8988.902     9037.185     10050.898
198  TIM2+F+G4     4300.771     194 8989.543     9037.826     10051.539
199  TIM2+F+I+G4   4292.444     195 8974.887     9023.700     10042.357
200  TIM2+F+R2     4272.588     195 8935.176     8983.988     10002.646
201  TIM2+F+R3     4272.584     197 8939.169     8989.049     10017.587
209  TIM3e         4371.916     190 9123.831     9170.031     10163.930
210  TIM3e+I       4304.936     191 8991.872     9038.588     10037.445
211  TIM3e+G4      4305.378     191 8992.755     9039.471     10038.328
212  TIM3e+I+G4    4297.045     192 8978.090     9025.325     10029.138
213  TIM3e+R2      4277.260     192 8938.519     8985.755     9989.567
214  TIM3e+R3      4277.259     194 8942.519     8990.802     10004.515
222  TIM3+F        4367.562     193 9121.124     9168.882     10177.646
223  TIM3+F+I      4300.407     194 8988.814     9037.097     10050.809
224  TIM3+F+G4     4300.777     194 8989.553     9037.836     10051.549
225  TIM3+F+I+G4   4292.356     195 8974.712     9023.524     10042.182
226  TIM3+F+R2     4272.806     195 8935.611     8984.424     10003.081
227  TIM3+F+R3     4272.807     197 8939.613     8989.493     10018.032
235  TVMe          4391.252     191 9164.504     9211.220     10210.077
236  TVMe+I        4319.506     192 9023.012     9070.247     10074.059
237  TVMe+G4       4321.423     192 9026.845     9074.080     10077.893
238  TVMe+I+G4     4312.549     193 9011.098     9058.855     10067.619
239  TVMe+R2       4292.723     193 8971.447     9019.205     10027.969
240  TVMe+R3       4292.713     195 8975.426     9024.239     10042.896
248  TVM+F         4391.365     194 9170.730     9219.013     10232.725
249  TVM+F+I       4318.889     195 9027.777     9076.589     10095.247
250  TVM+F+G4      4320.959     195 9031.918     9080.731     10099.388
251  TVM+F+I+G4    4311.990     196 9015.981     9065.325     10088.925
252  TVM+F+R2      4292.605     196 8977.211     9026.555     10050.155
253  TVM+F+R3      4292.605     198 8981.211     9031.629     10065.104
261  SYM           4371.109     192 9126.218     9173.453     10177.265
262  SYM+I         4304.286     193 8994.572     9042.330     10051.094
263  SYM+G4        4304.696     193 8995.392     9043.150     10051.914
264  SYM+I+G4      4296.191     194 8980.383     9028.666     10042.378
265  SYM+R2        4276.279     194 8940.558     8988.841     10002.553
266  SYM+R3        4276.279     196 8944.557     8993.902     10017.501
274  GTR+F         4366.929     195 9123.858     9172.671     10191.328
275  GTR+F+I       4299.924     196 8991.849     9041.193     10064.793
276  GTR+F+G4      4300.262     196 8992.524     9041.868     10065.468
277  GTR+F+I+G4    4291.686     197 8977.371     9027.251     10055.789
278  GTR+F+R2      4272.082     197 8938.163     8988.043     10016.582
279  GTR+F+R3      4272.078     199 8942.156     8993.117     10031.523
Akaike Information Criterion:           TN+F+R2
Corrected Akaike Information Criterion: TN+F+R2
Bayesian Information Criterion:         TNe+R2
Best-fit model: TNe+R2 chosen according to BIC

All model information printed to Pettalidae_18S_mafft_BMGE.fasta.model.gz
CPU time for ModelFinder: 9.561 seconds (0h:0m:9s)
Wall-clock time for ModelFinder: 9.717 seconds (0h:0m:9s)
Generating 1000 samples for ultrafast bootstrap (seed: 264844)...

NOTE: 2 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -4412.087
2. Current log-likelihood: -4341.616
3. Current log-likelihood: -4339.061
4. Current log-likelihood: -4336.336
5. Current log-likelihood: -4333.418
6. Current log-likelihood: -4330.547
7. Current log-likelihood: -4327.724
8. Current log-likelihood: -4324.738
9. Current log-likelihood: -4321.551
10. Current log-likelihood: -4318.215
11. Current log-likelihood: -4314.753
12. Current log-likelihood: -4311.215
13. Current log-likelihood: -4307.692
14. Current log-likelihood: -4304.403
15. Current log-likelihood: -4301.448
16. Current log-likelihood: -4298.898
17. Current log-likelihood: -4296.731
18. Current log-likelihood: -4294.835
19. Current log-likelihood: -4293.065
20. Current log-likelihood: -4291.244
21. Current log-likelihood: -4289.250
22. Current log-likelihood: -4287.095
23. Current log-likelihood: -4284.812
24. Current log-likelihood: -4282.541
25. Current log-likelihood: -4280.507
26. Current log-likelihood: -4278.937
27. Current log-likelihood: -4277.921
28. Current log-likelihood: -4277.610
29. Current log-likelihood: -4277.453
Optimal log-likelihood: -4277.384
Rate parameters:  A-C: 1.00000  A-G: 1.76953  A-T: 1.00000  C-G: 1.00000  C-T: 5.28584  G-T: 1.00000
Base frequencies:  A: 0.250  C: 0.250  G: 0.250  T: 0.250
Site proportion and rates:  (0.970,0.551) (0.030,15.625)
Parameters optimization took 29 rounds (1.120 sec)
Computing ML distances based on estimated model parameters... 0.045 sec
Computing BIONJ tree...
0.060 seconds
Log-likelihood of BIONJ tree: -4272.605
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 0.633 second
Computing log-likelihood of 98 initial trees ... 1.331 seconds
Current best score: -4265.486

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -4265.388
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 2: -4265.013
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 6: -4264.723
Iteration 10 / LogL: -4264.908 / Time: 0h:0m:5s
Iteration 20 / LogL: -4270.019 / Time: 0h:0m:8s
Finish initializing candidate tree set (20)
Current best tree score: -4264.723 / CPU time: 7.339
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 24: -4263.149
Iteration 30 / LogL: -4271.315 / Time: 0h:0m:11s (0h:0m:37s left)
Iteration 40 / LogL: -4264.247 / Time: 0h:0m:14s (0h:0m:30s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 41: -4263.050
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 50: -4262.527
Iteration 50 / LogL: -4262.527 / Time: 0h:0m:17s (0h:0m:35s left)
Log-likelihood cutoff on original alignment: -4289.972
Iteration 60 / LogL: -4273.565 / Time: 0h:0m:20s (0h:0m:31s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 66: -4262.488
Iteration 70 / LogL: -4262.547 / Time: 0h:0m:23s (0h:0m:32s left)
Iteration 80 / LogL: -4265.678 / Time: 0h:0m:25s (0h:0m:28s left)
Iteration 90 / LogL: -4263.190 / Time: 0h:0m:28s (0h:0m:24s left)
Iteration 100 / LogL: -4264.231 / Time: 0h:0m:31s (0h:0m:21s left)
Log-likelihood cutoff on original alignment: -4289.972
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.996
Iteration 110 / LogL: -4276.069 / Time: 0h:0m:34s (0h:0m:28s left)
Iteration 120 / LogL: -4263.662 / Time: 0h:0m:37s (0h:0m:25s left)
BETTER TREE FOUND at iteration 122: -4262.485
Iteration 130 / LogL: -4262.735 / Time: 0h:0m:40s (0h:0m:29s left)
Iteration 140 / LogL: -4271.026 / Time: 0h:0m:43s (0h:0m:25s left)
Iteration 150 / LogL: -4265.577 / Time: 0h:0m:46s (0h:0m:22s left)
Log-likelihood cutoff on original alignment: -4289.972
Iteration 160 / LogL: -4275.991 / Time: 0h:0m:49s (0h:0m:19s left)
Iteration 170 / LogL: -4270.935 / Time: 0h:0m:52s (0h:0m:16s left)
Iteration 180 / LogL: -4264.169 / Time: 0h:0m:55s (0h:0m:13s left)
Iteration 190 / LogL: -4265.582 / Time: 0h:0m:58s (0h:0m:9s left)
Iteration 200 / LogL: -4293.110 / Time: 0h:1m:1s (0h:0m:6s left)
Log-likelihood cutoff on original alignment: -4289.972
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.993
BETTER TREE FOUND at iteration 201: -4262.484
Iteration 210 / LogL: -4274.027 / Time: 0h:1m:4s (0h:0m:28s left)
Iteration 220 / LogL: -4265.578 / Time: 0h:1m:7s (0h:0m:24s left)
BETTER TREE FOUND at iteration 221: -4262.482
Iteration 230 / LogL: -4262.589 / Time: 0h:1m:10s (0h:0m:28s left)
BETTER TREE FOUND at iteration 235: -4262.479
BETTER TREE FOUND at iteration 240: -4262.478
Iteration 240 / LogL: -4262.478 / Time: 0h:1m:13s (0h:0m:30s left)
Iteration 250 / LogL: -4263.907 / Time: 0h:1m:16s (0h:0m:27s left)
Log-likelihood cutoff on original alignment: -4290.470
Iteration 260 / LogL: -4265.614 / Time: 0h:1m:19s (0h:0m:24s left)
Iteration 270 / LogL: -4265.128 / Time: 0h:1m:22s (0h:0m:21s left)
Iteration 280 / LogL: -4262.542 / Time: 0h:1m:25s (0h:0m:18s left)
BETTER TREE FOUND at iteration 285: -4262.476
Iteration 290 / LogL: -4262.543 / Time: 0h:1m:28s (0h:0m:29s left)
Iteration 300 / LogL: -4262.487 / Time: 0h:1m:31s (0h:0m:26s left)
Log-likelihood cutoff on original alignment: -4290.623
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.995
Iteration 310 / LogL: -4262.532 / Time: 0h:1m:35s (0h:0m:27s left)
Iteration 320 / LogL: -4267.934 / Time: 0h:1m:38s (0h:0m:24s left)
Iteration 330 / LogL: -4333.312 / Time: 0h:1m:41s (0h:0m:21s left)
Iteration 340 / LogL: -4270.920 / Time: 0h:1m:44s (0h:0m:18s left)
Iteration 350 / LogL: -4273.763 / Time: 0h:1m:47s (0h:0m:15s left)
Log-likelihood cutoff on original alignment: -4290.470
BETTER TREE FOUND at iteration 355: -4262.476
Iteration 360 / LogL: -4262.543 / Time: 0h:1m:50s (0h:0m:29s left)
Iteration 370 / LogL: -4271.266 / Time: 0h:1m:53s (0h:0m:26s left)
Iteration 380 / LogL: -4265.066 / Time: 0h:1m:56s (0h:0m:23s left)
Iteration 390 / LogL: -4264.225 / Time: 0h:2m:0s (0h:0m:20s left)
Iteration 400 / LogL: -4278.945 / Time: 0h:2m:3s (0h:0m:16s left)
Log-likelihood cutoff on original alignment: -4290.470
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.995
Iteration 410 / LogL: -4262.550 / Time: 0h:2m:6s (0h:0m:27s left)
Iteration 420 / LogL: -4262.478 / Time: 0h:2m:10s (0h:0m:24s left)
Iteration 430 / LogL: -4282.664 / Time: 0h:2m:13s (0h:0m:21s left)
Iteration 440 / LogL: -4262.480 / Time: 0h:2m:16s (0h:0m:18s left)
Iteration 450 / LogL: -4272.020 / Time: 0h:2m:20s (0h:0m:15s left)
Log-likelihood cutoff on original alignment: -4291.332
TREE SEARCH COMPLETED AFTER 456 ITERATIONS / Time: 0h:2m:22s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -4262.476
Optimal log-likelihood: -4262.475
Rate parameters:  A-C: 1.00000  A-G: 1.77423  A-T: 1.00000  C-G: 1.00000  C-T: 5.27961  G-T: 1.00000
Base frequencies:  A: 0.250  C: 0.250  G: 0.250  T: 0.250
Site proportion and rates:  (0.975,0.591) (0.025,16.766)
Parameters optimization took 1 rounds (0.026 sec)
BEST SCORE FOUND : -4262.475

Testing tree branches by SH-like aLRT with 1000 replicates...
1.509 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Pettalidae_18S_mafft_BMGE.fasta.splits.nex
Total tree length: 0.177

Total number of iterations: 456
CPU time used for tree search: 140.271 sec (0h:2m:20s)
Wall-clock time used for tree search: 141.128 sec (0h:2m:21s)
Total CPU time used: 143.320 sec (0h:2m:23s)
Total wall-clock time used: 144.421 sec (0h:2m:24s)

Computing bootstrap consensus tree...
Reading input file Pettalidae_18S_mafft_BMGE.fasta.splits.nex...
95 taxa and 1504 splits.
Consensus tree written to Pettalidae_18S_mafft_BMGE.fasta.contree
Reading input trees file Pettalidae_18S_mafft_BMGE.fasta.contree
Log-likelihood of consensus tree: -4262.540

Analysis results written to: 
  IQ-TREE report:                Pettalidae_18S_mafft_BMGE.fasta.iqtree
  Maximum-likelihood tree:       Pettalidae_18S_mafft_BMGE.fasta.treefile
  Likelihood distances:          Pettalidae_18S_mafft_BMGE.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Pettalidae_18S_mafft_BMGE.fasta.splits.nex
  Consensus tree:                Pettalidae_18S_mafft_BMGE.fasta.contree
  Screen log file:               Pettalidae_18S_mafft_BMGE.fasta.log

Date and Time: Wed Jun 15 23:16:09 2022
